To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("LINC")
In most cases, you don't need to download the package archive at all.
LINC
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see LINC.
co-expression of lincRNAs and protein-coding genes
Bioconductor version: 3.4
This package provides methods to compute co-expression networks of lincRNAs and protein-coding genes. Biological terms associated with the sets of protein-coding genes predict the biological contexts of lincRNAs according to the 'Guilty by Association' approach.
Author: Manuel Goepferich, Carl Herrmann
Maintainer: Manuel Goepferich <manuel.goepferich at gmx.de>
Citation (from within R,
enter citation("LINC")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("LINC")
Documentation
| HTML | R Script | LINC - Co-Expression Analysis of lincRNAs |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | BiologicalQuestion, GeneExpression, GeneRegulation, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.3.1), methods, stats |
| Imports | Rcpp (>= 0.11.0), DOSE, ggtree, gridExtra, ape, grid, png, Biobase, sva, reshape2, utils, grDevices, org.Hs.eg.db, clusterProfiler, ggplot2, ReactomePA |
| LinkingTo | Rcpp |
| Suggests | RUnit, BiocGenerics, knitr, biomaRt |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | LINC_1.2.0.tar.gz |
| Windows Binary | LINC_1.2.0.zip (32- & 64-bit) |
| Mac OS X 10.9 (Mavericks) | LINC_1.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/LINC/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/LINC/ |
| Package Downloads Report | Download Stats |
Documentation »
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