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This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see annotate.

Annotation for microarrays

Bioconductor version: 2.8

Using R enviroments for annotation.

Author: R. Gentleman

Maintainer: Biocore Team c/o BioC user list <bioconductor at>

Citation (from within R, enter citation("annotate")):


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PDF annotate.pdf
PDF chromLoc.pdf
PDF GOusage.pdf
PDF prettyOutput.pdf
PDF query.pdf
PDF useDataPkgs.pdf
PDF useHomology.pdf
PDF useProbeInfo.pdf
PDF   Reference Manual


biocViews Annotation, GO, Pathways, Software
Version 1.30.1
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License Artistic-2.0
Depends R (>= 2.4.0), AnnotationDbi(>= 0.1.15)
Imports Biobase, AnnotationDbi, DBI, xtable, graphics, utils, stats, methods
Suggests Biobase, hgu95av2.db, genefilter, Biostrings(>= 2.4.4), rae230a.db, rae230aprobe, tkWidgets, XML (>= 0.92-2), GO.db,,, hom.Hs.inp.db
Depends On Me Agi4x44PreProcess, ChromHeatMap, GeneAnswers, geneplotter, GGtools, GSEABase, idiogram, macat, MLInterfaces, Neve2006, ontoTools, PCpheno, phenoTest, RpsiXML, safe, ScISI
Imports Me affycoretools, Category, ChromHeatMap, codelink, GeneAnswers, genefilter, geneplotter, GlobalAncova, globaltest, GOstats, GSEABase, lumi, methylumi, phenoTest, qpgraph, safe, ScISI, splicegear, tigre
Suggests Me adme16cod.db, ag.db, ath1121501.db, BiocCaseStudies, biomaRt, bovine.db, canine.db, canine2.db, celegans.db, chicken.db, drosgenome1.db, drosophila2.db, ecoli2.db, geneplotter, GGHumanMethCancerPanelv1.db, GlobalAncova, globaltest, GOstats, GSEAlm, h10kcod.db, h20kcod.db, hcg110.db, hgfocus.db, hgu133a.db, hgu133a2.db, hgu133b.db, hgu133plus2.db, hgu219.db, hgu95a.db, hgu95av2.db, hgu95b.db, hgu95c.db, hgu95d.db, hgu95e.db, hguatlas13k.db, hgubeta7.db, hguDKFZ31.db, hgug4100a.db, hgug4101a.db, hgug4110b.db, hgug4111a.db, hgug4112a.db, hguqiagenv3.db, hi16cod.db, hs25kresogen.db, Hs6UG171.db, HsAgilentDesign026652.db, hthgu133a.db, hthgu133b.db, hu35ksuba.db, hu35ksubb.db, hu35ksubc.db, hu35ksubd.db, hu6800.db, hugene10stprobeset.db, hugene10sttranscriptcluster.db, hugene11stprobeset.db, hugene11sttranscriptcluster.db, HuO22.db, hwgcod.db, illuminaHumanDASLBeadID.db, IlluminaHumanMethylation27k.db, IlluminaHumanMethylation450k.db, illuminaHumanv1.db, illuminaHumanv1BeadID.db, illuminaHumanv2.db, illuminaHumanv2BeadID.db, illuminaHumanv3.db, illuminaHumanv3BeadID.db, illuminaHumanv4.db, illuminaHumanv4BeadID.db, illuminaHumanWGDASLv3.db, illuminaHumanWGDASLv4.db, illuminaMousev1.db, illuminaMousev1BeadID.db, illuminaMousev1p1.db, illuminaMousev1p1BeadID.db, illuminaMousev2.db, illuminaMousev2BeadID.db, illuminaRatv1.db, illuminaRatv1BeadID.db, indac.db, JazaeriMetaData.db, LAPOINTE.db, lumiHumanAll.db, lumiMouseAll.db, lumiRatAll.db, m10kcod.db, m20kcod.db, maigesPack, mgu74a.db, mgu74av2.db, mgu74b.db, mgu74bv2.db, mgu74c.db, mgu74cv2.db, mguatlas5k.db, mgug4104a.db, mgug4120a.db, mgug4121a.db, mgug4122a.db, mi16cod.db, MLP, mm24kresogen.db, MmAgilentDesign026655.db, moe430a.db, moe430b.db, mogene10stprobeset.db, mogene10sttranscriptcluster.db, mogene11stprobeset.db, mogene11sttranscriptcluster.db, mouse4302.db, mouse430a2.db, mpedbarray.db, mu11ksuba.db, mu11ksubb.db, Mu15v1.db, mu19ksuba.db, mu19ksubb.db, mu19ksubc.db, Mu22v3.db, mwgcod.db, Norway981.db, nugohs1a520180.db, nugomm1a520177.db, oneChannelGUI, OperonHumanV3.db,, org.At.tair.db,,,,,,,,,,,, org.Pf.plasmo.db,,, org.Sc.sgd.db,,,, PartheenMetaData.db, pedbarrayv10.db, pedbarrayv9.db, POCRCannotation.db, porcine.db, puma, r10kcod.db, rae230a.db, rae230b.db, ragene10stprobeset.db, ragene10sttranscriptcluster.db, ragene11stprobeset.db, ragene11sttranscriptcluster.db, rat2302.db, rgu34a.db, rgu34b.db, rgu34c.db, rguatlas4k.db, rgug4105a.db, rgug4130a.db, rgug4131a.db, ri16cod.db, RnAgilentDesign028282.db, rnu34.db, Roberts2005Annotation.db, rtu34.db, rwgcod.db, SHDZ.db, siggenes, tigre, u133x3p.db, xlaevis.db, yeast2.db, ygs98.db, zebrafish.db
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