To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ontoTools")

In most cases, you don't need to download the package archive at all.

ontoTools

   

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see ontoTools.

graphs and sparse matrices for working with ontologies; formal objects for nomenclatures with provenance management

Bioconductor version: 2.8

tools for working with ontologies and graphs

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: Vince Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("ontoTools")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ontoTools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ontoTools")

 

PDF demoComp.pdf
PDF ontoTools.pdf
PDF ontoToolsArchiving.pdf
PDF prot2.pdf
PDF protlk.pdf
PDF sgdiOnto.pdf
PDF   Reference Manual

Details

biocViews GraphsAndNetworks, Infrastructure, Software
Version 1.30.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License GPL-2
Depends R (>= 2.4.0), methods, graph, Biobase(>= 2.5.5), AnnotationDbi, SparseM, GO.db, annotate
Imports
LinkingTo
Suggests combinat, Iyer517, org.Hs.eg.db, KEGG.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ontoTools_1.30.0.tar.gz
Windows Binary ontoTools_1.30.0.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ontoTools/tree/release-2.8
Package Short Url http://bioconductor.org/packages/ontoTools/
Package Downloads Report Download Stats

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