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This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see oneChannelGUI.

This package extends the capabilities of affylmGUI graphical interface. Affymetrix 3' IVT, gene an exon arrays are actually implemented togheter with Illumina, GEO matrix series files and tab delimited files. Next Generation Sequencing secondary analysis for ncRNA quantification is also available.

Bioconductor version: 2.8

This package was developed to simplify the use of Bioconductor tools for beginners having limited or no experience in writing R code. This library provides a graphical interface for microarray gene and exon level analysis as well as basic secondary analysis of NGS data for ncRNA quantification.

Author: Raffale A Calogero, Bioinformatics and Genomics Unit, Dept. of Clinical and Biological Sciences Torino (Italy)

Maintainer: Raffaele A Calogero <raffaele.calogero at>

Citation (from within R, enter citation("oneChannelGUI")):


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PDF fignew42.pdf
PDF install.pdf
PDF oneChannelGUI.pdf
PDF standAloneFunctions.pdf
PDF whatIsNew.pdf
PDF   Reference Manual


biocViews DataImport, DifferentialExpression, GUI, HighThroughputSequencing, Microarray, MultipleComparisons, OneChannel, Preprocessing, QualityControl, RNAseq, Software, Statistics
Version 1.18.7
In Bioconductor since BioC 2.0 (R-2.5) (9 years)
License The Artistic License, Version 2.0
Depends Biobase, limma, affylmGUI, tkWidgets, GOstats, AnnotationDbi, preprocessCore, IRanges, edgeR, baySeq, girafe
Suggests annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno, chipseq, BSgenome, Rgraphviz, affy, annaffy, affyPLM, multtest, ssize, sizepower, siggenes, RankProd,,,, metaArray, MergeMaid, biomaRt, GenomeGraphs, AffyCompatible, Biostrings, IRanges, rtracklayer, Genominator, hugene10sttranscriptcluster.db, mogene10sttranscriptcluster.db, ragene10sttranscriptcluster.db, HuExExonProbesetLocation, MoExExonProbesetLocation, RaExExonProbesetLocation, snow, RmiR, RmiR.Hs.miRNA
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