To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("oneChannelGUI")

In most cases, you don't need to download the package archive at all.

oneChannelGUI

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see oneChannelGUI.

This package extends the capabilities of affylmGUI graphical interface. Affymetrix 3' IVT, gene an exon arrays are actually implemented togheter with Illumina, GEO matrix series files and tab delimited files. Next Generation Sequencing secondary analysis for ncRNA quantification is also available.

Bioconductor version: 2.8

This package was developed to simplify the use of Bioconductor tools for beginners having limited or no experience in writing R code. This library provides a graphical interface for microarray gene and exon level analysis as well as basic secondary analysis of NGS data for ncRNA quantification.

Author: Raffale A Calogero, Bioinformatics and Genomics Unit, Dept. of Clinical and Biological Sciences Torino (Italy)

Maintainer: Raffaele A Calogero <raffaele.calogero at unito.it>

Citation (from within R, enter citation("oneChannelGUI")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("oneChannelGUI")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("oneChannelGUI")

PDF		fignew42.pdf
PDF		install.pdf
PDF		NGS.pdf
PDF		oneChannelGUI.pdf
PDF		standAloneFunctions.pdf
PDF		whatIsNew.pdf
PDF		Reference Manual

Details

biocViews	DataImport, DifferentialExpression, GUI, HighThroughputSequencing, Microarray, MultipleComparisons, OneChannel, Preprocessing, QualityControl, RNAseq, Software, Statistics
Version	1.18.7
In Bioconductor since	BioC 2.0 (R-2.5) (9 years)
License	The Artistic License, Version 2.0
Depends	Biobase, limma, affylmGUI, tkWidgets, GOstats, AnnotationDbi, preprocessCore, IRanges, edgeR, baySeq, girafe
Imports
LinkingTo
Suggests	annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno, chipseq, BSgenome, Rgraphviz, affy, annaffy, affyPLM, multtest, ssize, sizepower, siggenes, RankProd, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, metaArray, MergeMaid, biomaRt, GenomeGraphs, AffyCompatible, Biostrings, IRanges, rtracklayer, Genominator, hugene10sttranscriptcluster.db, mogene10sttranscriptcluster.db, ragene10sttranscriptcluster.db, HuExExonProbesetLocation, MoExExonProbesetLocation, RaExExonProbesetLocation, snow, RmiR, RmiR.Hs.miRNA
SystemRequirements
Enhances
URL	http://www.bioinformatica.unito.it/oneChannelGUI/
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	oneChannelGUI_1.18.7.tar.gz
Windows Binary	oneChannelGUI_1.18.7.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/oneChannelGUI/tree/release-2.8
Package Short Url	http://bioconductor.org/packages/oneChannelGUI/
Package Downloads Report	Download Stats