To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("macat")
In most cases, you don't need to download the package archive at all.
macat
|
This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see macat.
MicroArray Chromosome Analysis Tool
Bioconductor version: 2.8
This library contains functions to investigate links between differential gene expression and the chromosomal localization of the genes. MACAT is motivated by the common observation of phenomena involving large chromosomal regions in tumor cells. MACAT is the implementation of a statistical approach for identifying significantly differentially expressed chromosome regions. The functions have been tested on a publicly available data set about acute lymphoblastic leukemia (Yeoh et al.Cancer Cell 2002), which is provided in the library 'stjudem'.
Author: Benjamin Georgi, Matthias Heinig, Stefan Roepcke, Sebastian Schmeier, Joern Toedling
Maintainer: Joern Toedling <joern.toedling at curie.fr>
Citation (from within R,
enter citation("macat")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("macat")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("macat")
| chrom6T.pdf | ||
| chrom6TkNN.pdf | ||
| evalkNN6.pdf | ||
| Slidingchrom6s3.pdf | ||
| Reference Manual |
Details
| biocViews | DifferentialExpression, Microarray, Software, Visualization |
| Version | 1.26.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 11 years) |
| License | Artistic-2.0 |
| Depends | Biobase, annotate |
| Imports | |
| LinkingTo | |
| Suggests | hgu95av2.db, stjudem |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | macat_1.26.0.tar.gz |
| Windows Binary | macat_1.26.0.zip |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/macat/tree/release-2.8 |
| Package Short Url | http://bioconductor.org/packages/macat/ |
| Package Downloads Report | Download Stats |
Documentation »
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