To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("siggenes")

In most cases, you don't need to download the package archive at all.

siggenes

   

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see siggenes.

Multiple testing using SAM and Efron's empirical Bayes approaches

Bioconductor version: 2.8

Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).

Author: Holger Schwender

Maintainer: Holger Schwender <holger.schw at gmx.de>

Citation (from within R, enter citation("siggenes")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("siggenes")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("siggenes")

 

PDF siggenes.pdf
PDF siggenesRnews.pdf
PDF   Reference Manual

Details

biocViews DifferentialExpression, ExonArray, GeneExpression, Microarray, MultipleComparisons, SNP, Software
Version 1.26.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License LGPL (>= 2)
Depends methods, multtest, Biobase, splines
Imports
LinkingTo
Suggests affy, annotate, genefilter, KernSmooth, scrime (>= 1.2.5)
SystemRequirements
Enhances
URL
Depends On Me KCsmart
Imports Me charm, GeneSelector
Suggests Me GeneSelector, logicFS, oneChannelGUI, XDE
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source siggenes_1.26.0.tar.gz
Windows Binary siggenes_1.26.0.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/siggenes/tree/release-2.8
Package Short Url http://bioconductor.org/packages/siggenes/
Package Downloads Report Download Stats

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