To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GGtools")

In most cases, you don't need to download the package archive at all.

GGtools

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see GGtools.

software and data for genetics of gene expression (c) 2006 VJ Carey

Bioconductor version: 2.8

dealing with hapmap SNP reports, GWAS, etc.

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: Vince Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("GGtools")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GGtools")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GGtools")

biocViews	Bioinformatics, GeneticVariability, Genetics, SNP, Software
Version	3.10.2
In Bioconductor since	BioC 1.9 (R-2.4) (9.5 years)
License	Artistic-2.0
Depends	R (>= 2.7.0), methods, Biobase(>= 1.11.26), GGBase(>= 3.7.5), snpStats(>= 1.1.10), annotate, IRanges, rtracklayer, org.Hs.eg.db, GenomicRanges(>= 1.3.38), ff
Imports	AnnotationDbi, IRanges(>= 1.1.6), annaffy, GSEABase, rtracklayer
LinkingTo
Suggests	illuminaHumanv1.db, org.Hs.eg.db, SNPlocs.Hsapiens.dbSNP.20100427, rpart, rtracklayer, GSEABase, ceu1kg, ceuhm3, SNPlocs.Hsapiens.dbSNP.20090506, genefilter, hmyriB36
SystemRequirements
Enhances	multicore, Rsamtools
URL
Depends On Me	ceu1kg, cheung2010, encoDnaseI
Imports Me	ceuhm3
Suggests Me	hmyriB36, ind1KG
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	GGtools_3.10.2.tar.gz
Windows Binary	GGtools_3.10.2.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/GGtools/tree/release-2.8
Package Short Url	http://bioconductor.org/packages/GGtools/
Package Downloads Report	Download Stats

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