To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChromHeatMap")

In most cases, you don't need to download the package archive at all.

ChromHeatMap

   

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see ChromHeatMap.

Heat map plotting by genome coordinate

Bioconductor version: 2.8

The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.

Author: Tim F. Rayner

Maintainer: Tim F. Rayner <tfrayner at gmail.com>

Citation (from within R, enter citation("ChromHeatMap")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChromHeatMap")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChromHeatMap")

 

PDF ChromHeatMap.pdf
PDF   Reference Manual

Details

biocViews Software, Visualization
Version 1.6.0
In Bioconductor since BioC 2.5 (R-2.10) (6.5 years)
License Artistic-2.0
Depends R (>= 2.9.0), annotate(>= 1.20.0), AnnotationDbi(>= 1.4.0), hgu95av2.db
Imports annotate, AnnotationDbi, Biobase, graphics, grDevices, methods, stats, IRanges, rtracklayer
LinkingTo
Suggests ALL
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ChromHeatMap_1.6.0.tar.gz
Windows Binary ChromHeatMap_1.6.0.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ChromHeatMap/tree/release-2.8
Package Short Url http://bioconductor.org/packages/ChromHeatMap/
Package Downloads Report Download Stats

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