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Linear Models for Microarray Data

Bioconductor version: 2.14

Data analysis, linear models and differential expression for microarray data.

Author: Gordon Smyth [cre,aut], Matthew Ritchie [ctb], Jeremy Silver [ctb], James Wettenhall [ctb], Natalie Thorne [ctb], Davis McCarthy [ctb], Di Wu [ctb], Yifang Hu [ctb], Wei Shi [ctb], Belinda Phipson [ctb], Alicia Oshlack [ctb], Carolyn de Graaf [ctb], Mette Langaas [ctb], Egil Ferkingstad [ctb], Marcus Davy [ctb], Francois Pepin [ctb], Dongseok Choi [ctb]

Maintainer: Gordon Smyth <smyth at>

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PDF R Script Limma One Page Introduction
PDF usersguide.pdf
PDF   Reference Manual
Text   NEWS


biocViews AlternativeSplicing, BatchEffect, Bayesian, Clustering, DataImport, DifferentialExpression, DifferentialSplicing, ExonArray, GeneExpression, GeneSetEnrichment, Genetics, Microarray, MultipleComparison, Normalization, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, RNASeq, Regression, Software, TimeCourse, Transcription, TwoChannel, mRNAMicroarray, microRNAArray
Version 3.20.9
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License GPL (>=2)
Depends R (>= 2.3.0), methods
Suggests statmod (>= 1.2.2), splines, locfit, MASS, ellipse, affy, vsn, AnnotationDbi,, illuminaio
System Requirements
Depends On Me a4Base, AffyExpress, affylmGUI, AgiMicroRna, attract, birta, CALIB, CCl4, cghMCR, ChimpHumanBrainData, clippda, codelink, convert, COPDSexualDimorphism, Cormotif, coRNAi, DiffBind, DMRcate, DrugVsDisease, edgeR, ExiMiR, Fletcher2013a, gCMAP, HD2013SGI, HTqPCR, limmaGUI, maigesPack, maPredictDSC, marray, metagenomeSeq, metaseqR, MLSeq, MmPalateMiRNA, nem, PADOG, prot2D, qpcrNorm, qusage, Ringo, snapCGH, SSPA, tRanslatome, TurboNorm, wateRmelon
Imports Me affycoretools, ArrayExpress, arrayQuality, arrayQualityMetrics, ArrayTools, attract, beadarray, BeadArrayUseCases, betr, bumphunter, CALIB, CancerMutationAnalysis, ChAMP, charm, ChIPpeakAnno, compcodeR, explorase, flowBin, GeneSelectMMD, GeneSelector, GGBase, HTqPCR, iChip, lmdme, LVSmiRNA, maSigPro, minfi, MmPalateMiRNA, MSstats, OLIN, PADOG, PECA, phenoTest, PhenStat, ReportingTools, Ringo, RNAinteract, RNAither, RTN, RTopper, SimBindProfiles, snapCGH, timecourse, tweeDEseq, vsn
Suggests Me ABarray, ADaCGH2, beadarraySNP, BiocCaseStudies, BioNet, Category, categoryCompare, CMA, coGPS, dyebias, ELBOW, gage, GeneSelector, GEOquery, GSRI, GSVA, Heatplus, inSilicoDb, isobar, les, lumi, mammaPrintData, methylumi, MLP, npGSEA, oligo, oneChannelGUI, PGSEA, piano, plw, PREDA, puma, Rcade, RTopper, rtracklayer, seventyGeneData, sva, virtualArray

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