To install this package, start R and enter:


In most cases, you don't need to download the package archive at all.


GUI for affy analysis using limma package

Bioconductor version: 2.14

A Graphical User Interface for affy analysis using the limma Microarray package

Author: James Wettenhall and Ken Simpson Division of Genetics and Bioinformatics, WEHI.

Maintainer: Keith Satterley <keith at>

Citation (from within R, enter citation("affylmGUI")):


To install this package, start R and enter:



To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script affylmGUI Vignette
PDF R Script Extracting affy and limma objects from affylmGUI files
HTML About affylmGUI
HTML affylmGUI Documentation
HTML Customizing the menus in affylmGUI (for Advanced users)
HTML Troubleshooting Window Focus Problems
PDF   Reference Manual


biocViews DataImport, DifferentialExpression, GUI, Microarray, MultipleComparison, OneChannel, Preprocessing, QualityControl, Software
Version 1.38.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License LGPL
Depends limma, tcltk, affy, BiocInstaller, affyio, affy, tkrplot, affyPLM, R2HTML, xtable, gcrma, affyPLM, AnnotationDbi
System Requirements
Depends On Me oneChannelGUI
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source affylmGUI_1.38.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) affylmGUI_1.38.0.tgz
Mac OS X 10.9 (Mavericks) affylmGUI_1.38.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center