To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GSRI")

In most cases, you don't need to download the package archive at all.

GSRI

Gene Set Regulation Index

Bioconductor version: 2.14

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

Author: Julian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer

Maintainer: Julian Gehring <julian.gehring at embl.de>

Citation (from within R, enter citation("GSRI")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GSRI")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSRI")

PDF	R Script	Introduction to the GSRI package: Estimating Regulatory Effects utilizing the Gene Set Regulation Index
PDF		Reference Manual
Text		NEWS

biocViews	DifferentialExpression, Enrichment, GeneSetEnrichment, Microarray, Software, Transcription
Version	2.12.0
In Bioconductor since	BioC 2.6 (R-2.11)
License	GPL-3
Depends	R (>= 2.14.2), fdrtool
Imports	methods, graphics, stats, utils, genefilter, Biobase, GSEABase, les(>= 1.1.6)
Suggests	limma, hgu95av2.db
System Requirements
URL	http://julian-gehring.github.com/GSRI/
Depends On Me
Imports Me
Suggests Me

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