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Quality metrics on microarray data sets

Bioconductor version: 2.14

This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). Report contain both general and platform-specific sections. Both one and two color array platforms are supported.

Author: Audrey Kauffmann, Wolfgang Huber

Maintainer: Audrey Kauffmann <akauffmann.bioinfo at>

Citation (from within R, enter citation("arrayQualityMetrics")):


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PDF R Script Advanced topics: Customizing arrayQualityMetrics reports and programmatic processing of the output
PDF R Script Introduction: microarray quality assessment with arrayQualityMetrics
PDF   Reference Manual
Text   NEWS


biocViews Microarray, OneChannel, QualityControl, ReportWriting, Software, TwoChannel
Version 3.20.0
In Bioconductor since BioC 2.1 (R-2.6)
License LGPL (>= 2)
Imports affy, affyPLM(>= 1.27.3), beadarray, Biobase, Cairo (>= 1.4-6), genefilter, graphics, grDevices, grid, gridSVG, Hmisc, hwriter, lattice, latticeExtra, limma, methods, RColorBrewer, setRNG, stats, SVGAnnotation (>= 0.9-0), utils, vsn(>= 3.23.3), XML
Suggests ALLMLL, CCl4, BiocStyle, knitr
System Requirements
Depends On Me
Imports Me
Suggests Me

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Package Source arrayQualityMetrics_3.20.0.tar.gz
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