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Functions useful for those doing repetitive analyses with Affymetrix GeneChips.

Bioconductor version: 2.14

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at>

Citation (from within R, enter citation("affycoretools")):


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PDF R Script affycoretools biomaRt Integration
PDF R Script affycoretools Overview
PDF   Reference Manual


biocViews GeneExpression, Microarray, OneChannel, ReportWriting, Software
Version 1.36.1
In Bioconductor since BioC 1.8 (R-2.3)
License Artistic-2.0
Depends affy, Biobase, GO.db
Imports biomaRt, limma, GOstats, annotate, annaffy, genefilter, gcrma, splines, xtable, AnnotationDbi, lattice, gplots, R2HTML, oligoClasses, ReportingTools, hwriter
Suggests affydata, hgfocuscdf, rgl, BiocStyle, knitr
System Requirements
Depends On Me AgiMicroRna
Imports Me
Suggests Me

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Package Source affycoretools_1.36.1.tar.gz
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