DNAcopy

DNA copy number data analysis

Bioconductor version: 2.8

Segments DNA copy number data using circular binary segmentation to detect regions with abnormal copy number

Author: Venkatraman E. Seshan, Adam Olshen

Maintainer: Venkatraman E. Seshan <seshanv at mskcc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("DNAcopy")

To cite this package in a publication, start R and enter:

    citation("DNAcopy")

Documentation

PDF R Script DNAcopy
PDF   Reference Manual

Details

biocViews Microarray, CopyNumberVariants
Depends
Imports
Suggests
System Requirements
License GPL (>= 2)
URL
Depends On Me CGHcall, cghMCR, Clonality, snapCGH
Imports Me Clonality, cn.farms, genoset, snapCGH
Suggests Me ADaCGH2, beadarraySNP, Clonality
Version 1.26.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source DNAcopy_1.26.0.tar.gz
Windows Binary DNAcopy_1.26.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary DNAcopy_1.26.0.tgz
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