cghMCR

Find chromosome regions showing common gains/losses

Bioconductor version: 2.8

This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.

Author: J. Zhang and B. Feng

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("cghMCR")

To cite this package in a publication, start R and enter:

    citation("cghMCR")

Documentation

PDF R Script cghMCR findMCR
PDF   Reference Manual

Details

biocViews Microarray, CopyNumberVariants
Depends methods, DNAcopy, CNTools, limma
Imports
Suggests
System Requirements
License LGPL
URL
Depends On Me
Imports Me
Suggests Me
Version 1.10.0
Since Bioconductor 1.8 (R-2.3)

Package Downloads

Package Source cghMCR_1.10.0.tar.gz
Windows Binary cghMCR_1.10.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary cghMCR_1.10.0.tgz
Package Downloads Report Download Stats

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Fred Hutchinson Cancer Research Center