Clonality

Clonality testing

Bioconductor version: 2.8

Statistical tests for clonality versus independence of tumors from the same patient based on their LOH or genomewide copy number profiles

Author: Irina Ostrovnaya

Maintainer: Irina Ostrovnaya <ostrovni at mskcc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Clonality")

To cite this package in a publication, start R and enter:

    citation("Clonality")

Documentation

PDF R Script Clonality
PDF   Reference Manual

Details

biocViews Microarray, CopyNumberVariants, Classification, aCGH
Depends R (>= 2.12.2), DNAcopy
Imports DNAcopy, grDevices, graphics, stats, utils
Suggests gdata, DNAcopy
System Requirements
License GPL-3
URL
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source Clonality_1.0.0.tar.gz
Windows Binary Clonality_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary Clonality_1.0.0.tgz
Package Downloads Report Download Stats

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Fred Hutchinson Cancer Research Center