snapCGH

Segmentation, normalisation and processing of aCGH data.

Bioconductor version: 2.8

Methods for segmenting, normalising and processing aCGH data; including plotting functions for visualising raw and segmented data for individual and multiple arrays.

Author: Mike L. Smith, John C. Marioni, Steven McKinney, Thomas Hardcastle, Natalie P. Thorne

Maintainer: John Marioni <marioni at uchicago.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("snapCGH")

To cite this package in a publication, start R and enter:

    citation("snapCGH")

Documentation

PDF R Script Segmentation Overview
PDF   Reference Manual

Details

biocViews Microarray, CopyNumberVariants, TwoChannel, Preprocessing
Depends limma, DNAcopy, methods
Imports aCGH, cluster, DNAcopy, GLAD, graphics, grDevices, limma, methods, stats, tilingArray, utils
Suggests
System Requirements
License GPL
URL
Depends On Me ADaCGH2
Imports Me
Suggests Me beadarraySNP
Version 1.22.0
Since Bioconductor 1.8 (R-2.3)

Package Downloads

Package Source snapCGH_1.22.0.tar.gz
Windows Binary snapCGH_1.22.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary snapCGH_1.22.0.tgz
Package Downloads Report Download Stats

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