Analysis of data from aCGH experiments using parallel computing and ff objects

Bioconductor version: 2.8

Analysis and plotting of array CGH data. Allows usage of Circular Binary Segementation, wavelet-based smoothing (both as in Liu et al., and HaarSeg as in Ben-Yaacov and Eldar), HMM, BioHMM, GLAD, CGHseg. Most computations are parallelized.

Author: Ramon Diaz-Uriarte <rdiaz02 at>, Oscar M. Rueda < at>. Wavelet-based aCGH smoothing code from Li Hsu <lih at> and Douglas Grove <dgrove at>. Imagemap code from Barry Rowlingson <B.Rowlingson at>. HaarSeg code from Erez Ben-Yaacov; downloaded from <>

Maintainer: Ramon Diaz-Uriarte <rdiaz02 at>

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PDF R Script ADaCGH2 Overview
PDF   Reference Manual


biocViews Microarray, CopyNumberVariants
Depends R (>= 2.11.0), tilingArray, aCGH, waveslim, cluster, snapCGH, snowfall, ff
Suggests GLAD, DNAcopy, CGHregions, rlecuyer
System Requirements
License GPL (>= 3)
Depends On Me
Imports Me
Suggests Me
Version 1.2.0
Since Bioconductor 2.7 (R-2.12)

Package Downloads

Package Source ADaCGH2_1.2.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary ADaCGH2_1.2.0.tgz
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