source("http://bioconductor.org/biocLite.R")
biocLite("OTUbase")

OTUbase

Provides structure and functions for the analysis of OTU data

Bioconductor version: 2.13

Provides a platform for Operational Taxonomic Unit based analysis

Author: Daniel Beck, Matt Settles, and James A. Foster

Maintainer: Daniel Beck <danlbek at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("OTUbase")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OTUbase")

 

PDF	R Script	An introduction to OTUbase
PDF		Reference Manual

Details

biocViews	Bioinformatics, DataImport, HighThroughputSequencingData, Software
Version	1.12.0
In Bioconductor since	BioC 2.7 (R-2.12)
License	Artistic-2.0
Depends	R (>= 2.9.0), methods, ShortRead(>= 1.4.0), Biobase, vegan
Imports	Biostrings, ShortRead, IRanges
Suggests
System Requirements
URL
Depends On Me	mcaGUI
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	OTUbase_1.12.0.tar.gz
Windows Binary	OTUbase_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	OTUbase_1.12.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats