source("http://bioconductor.org/biocLite.R")
biocLite("ChIPsim")

ChIPsim

Simulation of ChIP-seq experiments

Bioconductor version: 2.13

A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.

Author: Peter Humburg

Maintainer: Peter Humburg <Peter.Humburg at well.ox.ac.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ChIPsim")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPsim")

 

PDF	R Script	Simulating ChIP-seq experiments
PDF		Reference Manual

Details

biocViews	Bioinformatics, ChIPseq, Infrastructure, Software
Version	1.16.0
In Bioconductor since	BioC 2.5 (R-2.10)
License	GPL (>= 2)
Depends	Biostrings(>= 2.29.2)
Imports	IRanges, XVector, Biostrings, ShortRead, graphics, methods, stats, utils
Suggests	actuar, zoo
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	ChIPsim_1.16.0.tar.gz
Windows Binary	ChIPsim_1.16.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	ChIPsim_1.16.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats