Category Analysis

Bioconductor version: Release (2.11)

A collection of tools for performing category analysis.

Author: R. Gentleman with contributions from S. Falcon and D.Sarkar

Maintainer: Bioconductor Package Maintainer <maintainer at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script Using Categories to Analyze Microarray Data
PDF R Script Using Chromosome Bands as Categories
PDF   Reference Manual
Text   NEWS


biocViews Annotation, GO, GeneSetEnrichment, Pathways, Software
Version 2.24.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License Artistic-2.0
Depends BiocGenerics(>= 0.3.2), AnnotationDbi(>= 0.1.15), Biobase(>= 2.17.8), methods
Imports BiocGenerics, graph, methods, Biobase, AnnotationDbi, RBGL, GSEABase(>= 1.19.3), genefilter, annotate(>= 1.15.6), stats, utils
Suggests EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, Matrix, KEGG.db, GO.db, SNPchip(>= 2.3.11), geneplotter, limma, lattice, graph, Biobase, genefilter, methods, RUnit, org.Sc.sgd.db, GOstats
System Requirements
Depends On Me categoryCompare, eisa, GOstats, PCpheno
Imports Me categoryCompare, cellHTS2, gCMAP, GOstats, PCpheno, phenoTest, ppiStats
Suggests Me BiocCaseStudies, cellHTS, MmPalateMiRNA, qpgraph

Package Downloads

Package Source Category_2.24.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) Category_2.24.0.tgz
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