Category

Category Analysis

Bioconductor version: Release (2.11)

A collection of tools for performing category analysis.

Author: R. Gentleman with contributions from S. Falcon and D.Sarkar

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Category")

To cite this package in a publication, start R and enter:

    citation("Category")

PDF	R Script	Using Categories to Analyze Microarray Data
PDF	R Script	Using Chromosome Bands as Categories
PDF		Reference Manual
Text		NEWS

biocViews	Annotation, GO, GeneSetEnrichment, Pathways, Software
Version	2.24.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier
License	Artistic-2.0
Depends	BiocGenerics(>= 0.3.2), AnnotationDbi(>= 0.1.15), Biobase(>= 2.17.8), methods
Imports	BiocGenerics, graph, methods, Biobase, AnnotationDbi, RBGL, GSEABase(>= 1.19.3), genefilter, annotate(>= 1.15.6), stats, utils
Suggests	EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, Matrix, KEGG.db, GO.db, SNPchip(>= 2.3.11), geneplotter, limma, lattice, graph, Biobase, genefilter, methods, RUnit, org.Sc.sgd.db, GOstats
System Requirements
URL
Depends On Me	categoryCompare, eisa, GOstats, PCpheno
Imports Me	categoryCompare, cellHTS2, gCMAP, GOstats, PCpheno, phenoTest, ppiStats
Suggests Me	BiocCaseStudies, cellHTS, MmPalateMiRNA, qpgraph

Common Bioconductor workflows include:

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