graph: A package to handle graph data structures

Bioconductor version: Release (2.11)

A package that implements some simple graph handling capabilities.

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script Attributes for Graph Objects
PDF R Script clusterGraph and distGraph
PDF R Script Graph
PDF R Script Graph Design
PDF R Script graphBAM and MultiGraph classes
PDF   Reference Manual


biocViews GraphsAndNetworks, Software
Version 1.36.2
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License Artistic-2.0
Depends R (>= 2.10), methods
Imports methods, stats, stats4, tools, utils, BiocGenerics(>= 0.1.11)
Suggests SparseM (>= 0.36), XML, RBGL, RUnit, cluster
System Requirements
Depends On Me apComplex, biocGraph, BioMVCClass, BioNet, CellNOptR, ddgraph, flowWorkspace, gage, gaggle, GeneNetworkBuilder, GOFunction, GOstats, GraphAT, graphite, GSEABase, gwascat, hyperdraw, hypergraph, KEGGgraph, maigesPack, NCIgraph, nem, netresponse, pathRender, pkgDepTools, ppiData, RbcBook1, RBGL, RBioinf, RCytoscape, Rgraphviz, RpsiXML, Rtreemix, SNAData, SRAdb, topGO, yeastExpData
Imports Me biocGraph, biocViews, CAMERA, Category, categoryCompare, DEGraph, flowCore, flowUtils, flowWorkspace, GeneAnswers, GeneNetworkBuilder, GOFunction, GOstats, GraphAT, graphite, GSEABase, HTSanalyzeR, KEGGgraph, keggorthology, NCIgraph, nem, OrganismDbi, PCpheno, pkgDepTools, ppiStats, qpgraph, RchyOptimyx, Rgraphviz, rsbml, Rtreemix, Streamer, topGO
Suggests Me BiocCaseStudies, Category, categoryCompare, DEGraph, EBcoexpress, ecolitk, MmPalateMiRNA, qpgraph, SPIA

Package Downloads

Package Source graph_1.36.2.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) graph_1.36.2.tgz
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