SNPchip

Visualizations for copy number alterations

Bioconductor version: Release (2.11)

This package defines methods for visualizing high-throughput genomic data

Author: Robert Scharpf <rscharpf at jhsph.edu> and Ingo Ruczinski

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("SNPchip")

To cite this package in a publication, start R and enter:

    citation("SNPchip")

PDF	R Script	Plotting Idiograms
PDF		Reference Manual

biocViews	CopyNumberVariants, GeneticVariability, SNP, Software, Visualization
Version	2.4.0
In Bioconductor since	BioC 2.0 (R-2.5)
License	LGPL (>= 2)
Depends	R (>= 2.14.0)
Imports	graphics, lattice, grid, foreach, utils, methods, oligoClasses(>= 1.19.30), Biobase, GenomicRanges
Suggests	crlmm, IRanges, RUnit
System Requirements
URL	http://www.biostat.jhsph.edu/~iruczins/software/snpchip.html
Depends On Me	mBPCR
Imports Me	crlmm, MinimumDistance, phenoTest
Suggests Me	Category, oligoClasses, VanillaICE

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