Rgraphviz

Provides plotting capabilities for R graph objects

Bioconductor version: Release (2.11)

Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package. Users on all platforms must install graphviz; see the README file, available in the source distribution of this file, for details.

Author: Jeff Gentry, Li Long, Robert Gentleman, Seth Falcon, Florian Hahne, Deepayan Sarkar, Kasper Daniel Hansen

Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Rgraphviz")

To cite this package in a publication, start R and enter:

    citation("Rgraphviz")

Documentation

PDF	R Script	A New Interface to Plot Graphs Using Rgraphviz
PDF	R Script	How To Plot A Graph Using Rgraphviz
PDF		Reference Manual
Text		README
Text		NEWS
Text		LICENSE

Details

biocViews	GraphsAndNetworks, NetworkVisualization, Software
Version	2.2.1
In Bioconductor since	BioC 1.6 (R-2.1) or earlier
License	file LICENSE
Depends	R (>= 2.6.0), methods, utils, graph, grid
Imports	stats4, graph, graphics, grDevices, grid, methods, utils
Suggests	RUnit, BiocGenerics, XML
System Requirements	Graphviz (>= 2.16)
URL
Depends On Me	biocGraph, BioMVCClass, flowMerge, GOFunction, hyperdraw, nem, netresponse, pathRender, TDARACNE
Imports Me	apComplex, biocGraph, DEGraph, GeneAnswers, GOFunction, nem, RchyOptimyx
Suggests Me	altcdfenvs, annotate, BiocCaseStudies, Category, CNORfuzzy, ddgraph, DEGraph, flowCore, flowMerge, flowWorkspace, GeneNetworkBuilder, geneplotter, GlobalAncova, globaltest, GOstats, GSEABase, KEGGgraph, MLP, NCIgraph, NCIgraphData, oneChannelGUI, pcaGoPromoter, pkgDepTools, RBGL, RBioinf, Rtreemix, safe, SNAData, SPIA, SRAdb, Streamer, topGO

Package Downloads

Package Source	Rgraphviz_2.2.1.tar.gz
Windows Binary	Rgraphviz_2.2.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard)	Rgraphviz_2.2.1.tgz
Package Downloads Report	Download Stats

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