phenoDist

Phenotypic distance measures

Bioconductor version: 2.8

PhenoDist is designed for measuring phenotypic distance in image-based high-throughput screening, in order to identify strong phenotypes and to group treatments into functional clusters.

Author: Xian Zhang, Gregoire Pau, Wolfgang Huber, Michael Boutros

Maintainer: Xian Zhang <x.zhang at dkfz.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("phenoDist")

To cite this package in a publication, start R and enter:

    citation("phenoDist")

Documentation

PDF R Script Introduction to phenoDist
PDF   Reference Manual

Details

biocViews CellBasedAssays, Bioinformatics
Depends R (>= 2.9.0), imageHTS, e1071
Imports
Suggests GOstats, MASS
System Requirements
License LGPL-2.1
URL http://www.dkfz.de/signaling, http://www.embl.de/research/units/genome_biology/huber/
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source phenoDist_1.0.0.tar.gz
Windows Binary phenoDist_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary
Package Downloads Report Download Stats

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