graph

DOI: 10.18129/B9.bioc.graph  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see graph.

graph: A package to handle graph data structures

Bioconductor version: 3.17

A package that implements some simple graph handling capabilities.

Author: R Gentleman [aut], Elizabeth Whalen [aut], W Huber [aut], S Falcon [aut], Halimat C. Atanda [ctb] (Converted 'MultiGraphClass' and 'GraphClass' vignettes from Sweave to RMarkdown / HTML.), Paul Villafuerte [ctb] (Converted 'clusterGraph' vignette from Sweave to RMarkdown / HTML.), Aliyu Atiku Mustapha [ctb] (Converted 'Graph' vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("graph")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("graph")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graph")

 

PDF R Script Attributes for Graph Objects
HTML R Script clusterGraph and distGraph
HTML R Script Graph Design
HTML R Script graphBAM and MultiGraph Classes
HTML R Script How to use the graph package
PDF   Reference Manual

Details

biocViews GraphAndNetwork, Software
Version 1.78.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 18.5 years)
License Artistic-2.0
Depends R (>= 2.10), methods, BiocGenerics(>= 0.13.11)
Imports stats, stats4, utils
LinkingTo
Suggests SparseM (>= 0.36), XML, RBGL, RUnit, cluster, BiocStyle, knitr
SystemRequirements
Enhances Rgraphviz
URL
Depends On Me apComplex, biocGraph, BioMVCClass, BioNet, BLMA, CellNOptR, clipper, CNORfeeder, EnrichmentBrowser, flowMerge, gaggle, GOstats, GraphAT, GRridge, GSEABase, hypergraph, keggorthology, maigesPack, MineICA, pathRender, Pigengene, pkgDepTools, RbcBook1, RBGL, RBioinf, RCyjs, Rgraphviz, ROntoTools, SNAData, SRAdb, topGO, vtpnet, yeastExpData
Imports Me alpine, AnnotationHubData, BgeeDB, BiocCheck, BiocFHIR, biocGraph, BiocOncoTK, BiocPkgTools, biocViews, BioPlex, bnem, CAMERA, Category, categoryCompare, chimeraviz, ChIPpeakAnno, CHRONOS, consICA, CytoML, DAPARdata, dce, DEGraph, DEsubs, epiNEM, EventPointer, fgga, flowClust, flowWorkspace, gage, GAPGOM, GeneNetworkBuilder, GenomicInteractionNodes, GOSim, GraphAT, graphite, hyperdraw, KEGGgraph, keggorthology, keggorthology, MIGSA, mirIntegrator, mnem, NCIgraph, NeighborNet, netresponse, OncoSimulR, ontoProc, openCyto, oposSOM, OrganismDbi, pathview, PFP, PhenStat, pkgDepTools, pwOmics, qpgraph, RCy3, RGraph2js, rsbml, Rtreemix, SGCP, SplicingGraphs, Streamer, trackViewer, VariantFiltering
Suggests Me AnnotationDbi, DAPAR, DEGraph, EBcoexpress, ecolitk, gwascat, KEGGlincs, MLP, NetPathMiner, rBiopaxParser, RCX, rTRM, S4Vectors, SPIA, VariantTools
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package graph_1.78.0.tar.gz
Windows Binary graph_1.78.0.zip (64-bit only)
macOS Binary (x86_64) graph_1.78.0.tgz
macOS Binary (arm64) graph_1.78.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/graph
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/graph
Bioc Package Browser https://code.bioconductor.org/browse/graph/
Package Short Url https://bioconductor.org/packages/graph/
Package Downloads Report Download Stats

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