graph

DOI: 10.18129/B9.bioc.graph  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see graph.

graph: A package to handle graph data structures

Bioconductor version: 3.17

A package that implements some simple graph handling capabilities.

Author: R Gentleman [aut], Elizabeth Whalen [aut], W Huber [aut], S Falcon [aut], Halimat C. Atanda [ctb] (Converted 'MultiGraphClass' and 'GraphClass' vignettes from Sweave to RMarkdown / HTML.), Paul Villafuerte [ctb] (Converted 'clusterGraph' vignette from Sweave to RMarkdown / HTML.), Aliyu Atiku Mustapha [ctb] (Converted 'Graph' vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("graph")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graph")

 

PDF	R Script	Attributes for Graph Objects
HTML	R Script	clusterGraph and distGraph
HTML	R Script	Graph Design
HTML	R Script	graphBAM and MultiGraph Classes
HTML	R Script	How to use the graph package
PDF		Reference Manual

Details

biocViews	GraphAndNetwork, Software
Version	1.78.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 18.5 years)
License	Artistic-2.0
Depends	R (>= 2.10), methods, BiocGenerics(>= 0.13.11)
Imports	stats, stats4, utils
LinkingTo
Suggests	SparseM (>= 0.36), XML, RBGL, RUnit, cluster, BiocStyle, knitr
SystemRequirements
Enhances	Rgraphviz
URL
Depends On Me	apComplex, biocGraph, BioMVCClass, BioNet, BLMA, CellNOptR, clipper, CNORfeeder, EnrichmentBrowser, flowMerge, gaggle, GOstats, GraphAT, GRridge, GSEABase, hypergraph, keggorthology, maigesPack, MineICA, pathRender, Pigengene, pkgDepTools, RbcBook1, RBGL, RBioinf, RCyjs, Rgraphviz, ROntoTools, SNAData, SRAdb, topGO, vtpnet, yeastExpData
Imports Me	alpine, AnnotationHubData, BgeeDB, BiocCheck, BiocFHIR, biocGraph, BiocOncoTK, BiocPkgTools, biocViews, BioPlex, bnem, CAMERA, Category, categoryCompare, chimeraviz, ChIPpeakAnno, CHRONOS, consICA, CytoML, DAPARdata, dce, DEGraph, DEsubs, epiNEM, EventPointer, fgga, flowClust, flowWorkspace, gage, GAPGOM, GeneNetworkBuilder, GenomicInteractionNodes, GOSim, GraphAT, graphite, hyperdraw, KEGGgraph, keggorthology, keggorthology, MIGSA, mirIntegrator, mnem, NCIgraph, NeighborNet, netresponse, OncoSimulR, ontoProc, openCyto, oposSOM, OrganismDbi, pathview, PFP, PhenStat, pkgDepTools, pwOmics, qpgraph, RCy3, RGraph2js, rsbml, Rtreemix, SGCP, SplicingGraphs, Streamer, trackViewer, VariantFiltering
Suggests Me	AnnotationDbi, DAPAR, DEGraph, EBcoexpress, ecolitk, gwascat, KEGGlincs, MLP, NetPathMiner, rBiopaxParser, RCX, rTRM, S4Vectors, SPIA, VariantTools
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	graph_1.78.0.tar.gz
Windows Binary	graph_1.78.0.zip (64-bit only)
macOS Binary (x86_64)	graph_1.78.0.tgz
macOS Binary (arm64)	graph_1.78.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/graph
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/graph
Bioc Package Browser	https://code.bioconductor.org/browse/graph/
Package Short Url	https://bioconductor.org/packages/graph/
Package Downloads Report	Download Stats