DOI: 10.18129/B9.bioc.CellNOptR  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see CellNOptR.

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

Bioconductor version: 3.17

This package does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and a set of data upon perturbation of the nodes in the network.

Author: Thomas Cokelaer [aut], Federica Eduati [aut], Aidan MacNamara [aut], S Schrier [ctb], Camille Terfve [aut], Enio Gjerga [ctb], Attila Gabor [cre]

Maintainer: Attila Gabor <attila.gabor at uni-heidelberg.de>

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biocViews CellBasedAssays, CellBiology, ImmunoOncology, Network, Pathways, Proteomics, Software, TimeCourse
Version 1.46.0
In Bioconductor since BioC 2.9 (R-2.14) (12 years)
License GPL-3
Depends R (>= 4.0.0), RBGL, graph, methods, RCurl, Rgraphviz, XML, ggplot2, rmarkdown
Imports igraph, stringi, stringr
Suggests data.table, dplyr, tidyr, readr, knitr, RUnit, BiocGenerics
SystemRequirements Graphviz version >= 2.2
Enhances doParallel, foreach
Depends On Me CNORdt, CNORfeeder, CNORfuzzy, CNORode
Imports Me bnem
Suggests Me MEIGOR
Links To Me
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Source Package CellNOptR_1.46.0.tar.gz
Windows Binary CellNOptR_1.46.0.zip
macOS Binary (x86_64) CellNOptR_1.46.0.tgz
macOS Binary (arm64) CellNOptR_1.46.0.tgz
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Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CellNOptR
Bioc Package Browser https://code.bioconductor.org/browse/CellNOptR/
Package Short Url https://bioconductor.org/packages/CellNOptR/
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