netresponse

DOI: 10.18129/B9.bioc.netresponse  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see netresponse.

Functional Network Analysis

Bioconductor version: 3.17

Algorithms for functional network analysis. Includes an implementation of a variational Dirichlet process Gaussian mixture model for nonparametric mixture modeling.

Author: Leo Lahti, Olli-Pekka Huovilainen, Antonio Gusmao and Juuso Parkkinen

Maintainer: Leo Lahti <leo.lahti at iki.fi>

Citation (from within R, enter citation("netresponse")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("netresponse")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netresponse")

 

HTML R Script microbiome R package
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBiology, Clustering, DifferentialExpression, GeneExpression, Genetics, GraphAndNetwork, Microarray, Network, NetworkInference, Software, Transcription
Version 1.60.0
In Bioconductor since BioC 2.7 (R-2.12) (13 years)
License GPL (>=2)
Depends R (>= 2.15.1), BiocStyle, Rgraphviz, rmarkdown, methods, minet, mclust, reshape2
Imports ggplot2, graph, igraph, parallel, plyr, qvalue, RColorBrewer
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL https://github.com/antagomir/netresponse
BugReports https://github.com/antagomir/netresponse/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package netresponse_1.60.0.tar.gz
Windows Binary netresponse_1.60.0.zip (64-bit only)
macOS Binary (x86_64) netresponse_1.60.0.tgz
macOS Binary (arm64) netresponse_1.60.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/netresponse
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/netresponse
Bioc Package Browser https://code.bioconductor.org/browse/netresponse/
Package Short Url https://bioconductor.org/packages/netresponse/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: