vtpnet

DOI: 10.18129/B9.bioc.vtpnet  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see vtpnet.

variant-transcription factor-phenotype networks

Bioconductor version: 3.17

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("vtpnet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vtpnet")

 

PDF	R Script	vtpnet: variant-transcription factor-network tools
PDF		Reference Manual

Details

biocViews	Network, Software
Version	0.40.0
In Bioconductor since	BioC 2.13 (R-3.0) (10 years)
License	Artistic-2.0
Depends	R (>= 3.0.0), graph, GenomicRanges, gwascat, doParallel, foreach
Imports
LinkingTo
Suggests	MotifDb, VariantAnnotation, Rgraphviz
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	vtpnet_0.40.0.tar.gz
Windows Binary	vtpnet_0.40.0.zip
macOS Binary (x86_64)	vtpnet_0.40.0.tgz
macOS Binary (arm64)	vtpnet_0.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/vtpnet
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/vtpnet
Bioc Package Browser	https://code.bioconductor.org/browse/vtpnet/
Package Short Url	https://bioconductor.org/packages/vtpnet/
Package Downloads Report	Download Stats