Rtreemix

DOI: 10.18129/B9.bioc.Rtreemix  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see Rtreemix.

Rtreemix: Mutagenetic trees mixture models.

Bioconductor version: 3.17

Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Author: Jasmina Bogojeska

Maintainer: Jasmina Bogojeska <jasmina.bogojeska at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rtreemix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rtreemix")

 

PDF	R Script	Rtreemix
PDF		Reference Manual

Details

biocViews	Software, StatisticalMethod
Version	1.62.0
In Bioconductor since	BioC 2.2 (R-2.7) (15.5 years)
License	LGPL
Depends	R (>= 2.5.0)
Imports	methods, graph, Biobase, Hmisc
LinkingTo
Suggests	Rgraphviz
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Rtreemix_1.62.0.tar.gz
Windows Binary	Rtreemix_1.62.0.zip
macOS Binary (x86_64)	Rtreemix_1.62.0.tgz
macOS Binary (arm64)	Rtreemix_1.62.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Rtreemix
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Rtreemix
Bioc Package Browser	https://code.bioconductor.org/browse/Rtreemix/
Package Short Url	https://bioconductor.org/packages/Rtreemix/
Package Downloads Report	Download Stats