DOI: 10.18129/B9.bioc.ComplexHeatmap  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see ComplexHeatmap.

Make Complex Heatmaps

Bioconductor version: 3.17

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.

Author: Zuguang Gu [aut, cre]

Maintainer: Zuguang Gu < at>

Citation (from within R, enter citation("ComplexHeatmap")):


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biocViews Sequencing, Software, Visualization
Version 2.16.0
In Bioconductor since BioC 3.1 (R-3.2) (8.5 years)
License MIT + file LICENSE
Depends R (>= 3.5.0), methods, grid, graphics, stats, grDevices
Imports circlize (>= 0.4.14), GetoptLong, colorspace, clue, RColorBrewer, GlobalOptions (>= 0.1.0), png, digest, IRanges, matrixStats, foreach, doParallel, codetools
Suggests testthat (>= 1.0.0), knitr, markdown, dendsort, jpeg, tiff, fastcluster, EnrichedHeatmap, dendextend (>= 1.0.1), grImport, grImport2, glue, GenomicRanges, gridtext, pheatmap (>= 1.0.12), gridGraphics, gplots, rmarkdown, Cairo, magick
Depends On Me AMARETTO, EnrichedHeatmap, InteractiveComplexHeatmap, recoup
Imports Me airpart, ASURAT, BiocOncoTK, BioNERO, blacksheepr, BloodGen3Module, CATALYST, celda, CeTF, COCOA, cola, COTAN, cytoKernel, DEGreport, DEP, diffcyt, diffUTR, ELMER, fCCAC, FLAMES, gCrisprTools, GeneTonic, GenomicSuperSignature, gmoviz, GRaNIE, hermes, InterCellar, iSEE, LineagePulse, MatrixQCvis, MesKit, microbiomeMarker, MOMA, monaLisa, muscat, musicatk, MWASTools, PathoStat, PeacoQC, pipeComp, POMA, profileplyr, RLSeq, scRNAseqApp, sechm, segmenter, signifinder, simplifyEnrichment, singleCellTK, sparrow, SPONGE, TBSignatureProfiler, TCGAWorkflow, Xeva, YAPSA
Suggests Me artMS, bambu, BindingSiteFinder, clustifyr, CNVRanger, dittoSeq, EnrichmentBrowser, gtrellis, HilbertCurve, mastR, msImpute, NanoporeRNASeq, pareg, plotgardener, projectR, proteasy, QFeatures, scDblFinder, SPIAT, TCGAbiolinks, TCGAutils, weitrix
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