projectR

DOI: 10.18129/B9.bioc.projectR  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see projectR.

Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering

Bioconductor version: 3.17

Functions for the projection of data into the spaces defined by PCA, CoGAPS, NMF, correlation, and clustering.

Author: Gaurav Sharma, Genevieve Stein-O'Brien

Maintainer: Genevieve Stein-O'Brien <gsteinobrien at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("projectR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("projectR")

 

PDF	R Script	projectR
PDF		Reference Manual
Text		LICENSE

Details

biocViews	BiologicalQuestion, FunctionalPrediction, GeneRegulation, Software
Version	1.16.0
In Bioconductor since	BioC 3.9 (R-3.6) (4.5 years)
License	GPL (==2)
Depends
Imports	methods, cluster, stats, limma, CoGAPS, NMF, ROCR, ggalluvial, RColorBrewer, dplyr, reshape2, viridis, scales, ggplot2
LinkingTo
Suggests	BiocStyle, gridExtra, grid, testthat, devtools, knitr, rmarkdown, ComplexHeatmap
SystemRequirements
Enhances
URL	https://github.com/genesofeve/projectR/
BugReports	https://support.bioconductor.org/t/projectR/
Depends On Me
Imports Me	ATACCoGAPS
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	projectR_1.16.0.tar.gz
Windows Binary	projectR_1.16.0.zip
macOS Binary (x86_64)	projectR_1.16.0.tgz
macOS Binary (arm64)	projectR_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/projectR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/projectR
Bioc Package Browser	https://code.bioconductor.org/browse/projectR/
Package Short Url	https://bioconductor.org/packages/projectR/
Package Downloads Report	Download Stats