DOI: 10.18129/B9.bioc.EnrichedHeatmap  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see EnrichedHeatmap.

Making Enriched Heatmaps

Bioconductor version: 3.17

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. Here we implement enriched heatmap by ComplexHeatmap package. Since this type of heatmap is just a normal heatmap but with some special settings, with the functionality of ComplexHeatmap, it would be much easier to customize the heatmap as well as concatenating to a list of heatmaps to show correspondance between different data sources.

Author: Zuguang Gu [aut, cre]

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("EnrichedHeatmap")):


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HTML R Script 1. Make Enriched Heatmaps
HTML R Script 2. Visualize Categorical Signals
HTML R Script 3. Compare row ordering methods
HTML R Script 4. Visualize Comprehensive Associations in Roadmap dataset
PDF   Reference Manual
Text   NEWS


biocViews Coverage, GenomeAnnotation, Sequencing, Software, Visualization
Version 1.30.0
In Bioconductor since BioC 3.2 (R-3.2) (8 years)
License MIT + file LICENSE
Depends R (>= 3.6.0), methods, grid, ComplexHeatmap(>= 2.11.0), GenomicRanges
Imports matrixStats, stats, GetoptLong, Rcpp, utils, locfit, circlize (>= 0.4.5), IRanges
LinkingTo Rcpp
Suggests testthat (>= 0.3), knitr, markdown, rmarkdown, genefilter, RColorBrewer
URL https://github.com/jokergoo/EnrichedHeatmap
Depends On Me
Imports Me extraChIPs, profileplyr
Suggests Me ComplexHeatmap, epistack, InteractiveComplexHeatmap
Links To Me
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Source Package EnrichedHeatmap_1.30.0.tar.gz
Windows Binary EnrichedHeatmap_1.30.0.zip
macOS Binary (x86_64) EnrichedHeatmap_1.30.0.tgz
macOS Binary (arm64) EnrichedHeatmap_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/EnrichedHeatmap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EnrichedHeatmap
Bioc Package Browser https://code.bioconductor.org/browse/EnrichedHeatmap/
Package Short Url https://bioconductor.org/packages/EnrichedHeatmap/
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