DOI: 10.18129/B9.bioc.scRNAseqApp  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see scRNAseqApp.

A single-cell RNAseq Shiny app-package

Bioconductor version: 3.17

scRNAseqApp is a Shiny app package that allows users to visualize single cell data interactively. It was modified from ShinyCell and repackaged to a tool to show multiple data. It can visulize the data with multiple information side by side.

Author: Jianhong Ou [aut, cre]

Maintainer: Jianhong Ou <jianhong.ou at>

Citation (from within R, enter citation("scRNAseqApp")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script scRNAseqApp Vignette
PDF   Reference Manual
Text   NEWS


biocViews RNASeq, SingleCell, Software, Visualization
Version 1.0.1
In Bioconductor since BioC 3.17 (R-4.3) (< 6 months)
License GPL-3
Depends R (>= 4.3.0)
Imports bibtex, bslib, circlize, ComplexHeatmap, data.table, DT, GenomicRanges, GenomeInfoDb, ggdendro, ggforce, ggplot2, ggrepel, ggridges, grDevices, grid, gridExtra, hdf5r, htmltools, IRanges, jsonlite, magrittr, methods, patchwork, plotly, RColorBrewer, RefManageR, Rsamtools, rtracklayer, S4Vectors, scales, scrypt, Seurat, SeuratObject, shiny, shinyhelper, shinymanager, slingshot, SingleCellExperiment, stats, tools, xfun, xml2, utils
Suggests rmarkdown, knitr, testthat, BiocStyle
Enhances celldex, future, SingleR, SummarizedExperiment, tricycle
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scRNAseqApp_1.0.1.tar.gz
Windows Binary (64-bit only)
macOS Binary (x86_64) scRNAseqApp_1.0.1.tgz
macOS Binary (arm64) scRNAseqApp_1.0.1.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Bioc Package Browser
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: