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DNAcopy
DNA copy number data analysis
Bioconductor version: 2.9
Segments DNA copy number data using circular binary segmentation to detect regions with abnormal copy number
Author: Venkatraman E. Seshan, Adam Olshen
Maintainer: Venkatraman E. Seshan <seshanv at mskcc.org>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("DNAcopy")
To cite this package in a publication, start R and enter:
citation("DNAcopy")
Documentation
| R Script | DNAcopy | |
| Reference Manual |
Details
| biocViews | Microarray, CopyNumberVariants |
| Depends | |
| Imports | |
| Suggests | |
| System Requirements | |
| License | GPL (>= 2) |
| URL | |
| Depends On Me | CGHcall, cghMCR, Clonality, CNAnorm, CRImage, snapCGH |
| Imports Me | Clonality, cn.farms, genoset, GWASTools, Repitools, snapCGH |
| Suggests Me | ADaCGH2, beadarraySNP, Clonality, cn.mops, fastseg, Repitools |
| Version | 1.28.0 |
| Since | Bioconductor 1.6 (R-2.1) or earlier |
Package Downloads
| Package Source | DNAcopy_1.28.0.tar.gz |
| Windows Binary | DNAcopy_1.28.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | DNAcopy_1.28.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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