CRImage

CRImage a package to classify cells and calculate tumour cellularity

Bioconductor version: 2.9

CRImage provides functionality to process and analyze images, in particular to classify cells in biological images. Furthermore, in the context of tumor images, it provides functionality to calculate tumour cellularity.

Author: Henrik Failmezger <failmezger at cip.ifi.lmu.de>, Yinyin Yuan <Yinyin.Yuan at cancer.org.uk>, Oscar Rueda <oscar.rueda at cancer.org.uk>, Florian Markowetz <Florian.Markowetz at cancer.org.uk>

Maintainer: Henrik Failmezger <failmezger at cip.ifi.lmu.de>, Yinyin Yuan <Yinyin.Yuan at cancer.org.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("CRImage")

To cite this package in a publication, start R and enter:

    citation("CRImage")

Documentation

PDF		cellularity2.pdf
PDF	R Script	CRImage Manual
PDF		labeledImage.pdf
PDF		segmentedImage.pdf
PDF		segmentedImageRaw.pdf
PDF		Reference Manual

Details

biocViews	CellBiology, Classification
Depends	EBImage, DNAcopy, aCGH
Imports	MASS, e1071, foreach
Suggests
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version	1.4.0
Since	Bioconductor 2.7 (R-2.12)