CGHcall

Calling aberrations for array CGH tumor profiles.

Bioconductor version: 2.9

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Author: Sjoerd Vosse and Mark van de Wiel

Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("CGHcall")

To cite this package in a publication, start R and enter:

    citation("CGHcall")

Documentation

PDF	R Script	CGHcall
PDF		Reference Manual

Details

biocViews	Microarray, Preprocessing, Visualization
Depends	R (>= 2.0.0), impute(>= 1.8.0), DNAcopy(>= 1.6.0), methods, Biobase, CGHbase
Imports
Suggests
System Requirements
License	GPL (http://www.gnu.org/copyleft/gpl.html)
URL
Depends On Me	CGHnormaliter
Imports Me	CGHnormaliter
Suggests Me
Version	2.14.0
Since	Bioconductor 2.1 (R-2.6)

Package Downloads

Package Source	CGHcall_2.14.0.tar.gz
Windows Binary	CGHcall_2.14.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	CGHcall_2.14.0.tgz
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center