cn.farms

cn.farms - Factor Analysis for copy number estimation

Bioconductor version: 2.9

This package implements the cn.FARMS algorithm for copy number variation (CNV) analysis. cn.FARMS allows to analyze the most common Affymetrix (250K-SNP6.0) array types, supports high-performance computing using snow and ff.

Author: Andreas Mitterecker, Djork-Arne Clevert

Maintainer: Andreas Mitterecker <mitterecker at bioinf.jku.at>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("cn.farms")

To cite this package in a publication, start R and enter:

    citation("cn.farms")

Documentation

PDF	R Script	cn.farms: Manual for the R package
PDF		Reference Manual

Details

biocViews	Microarray, Bioinformatics, CopyNumberVariants
Depends	R (>= 2.11), Biobase, methods, ff, oligoClasses, snowfall
Imports	DBI, affxparser, oligo, DNAcopy, preprocessCore, lattice
Suggests	pd.mapping250k.sty, pd.mapping250k.nsp, pd.genomewidesnp.5, pd.genomewidesnp.6
System Requirements
License	LGPL (>= 2.0)
URL	http://www.bioinf.jku.at/software/cnfarms/cnfarms.html
Depends On Me
Imports Me
Suggests Me
Version	1.3.6
Since	Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source	cn.farms_1.3.6.tar.gz
Windows Binary	cn.farms_1.3.6.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	cn.farms_1.3.6.tgz
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center