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Clonality
Clonality testing
Bioconductor version: 2.9
Statistical tests for clonality versus independence of tumors from the same patient based on their LOH or genomewide copy number profiles
Author: Irina Ostrovnaya
Maintainer: Irina Ostrovnaya <ostrovni at mskcc.org>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("Clonality")
To cite this package in a publication, start R and enter:
citation("Clonality")
Documentation
| R Script | Clonality | |
| Reference Manual |
Details
| biocViews | Microarray, CopyNumberVariants, Classification, aCGH |
| Depends | R (>= 2.12.2), DNAcopy |
| Imports | DNAcopy, grDevices, graphics, stats, utils |
| Suggests | gdata, DNAcopy |
| System Requirements | |
| License | GPL-3 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.2.0 |
| Since | Bioconductor 2.8 (R-2.13) |
Package Downloads
| Package Source | Clonality_1.2.0.tar.gz |
| Windows Binary | Clonality_1.2.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | Clonality_1.2.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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