Clonality testing

Bioconductor version: 2.9

Statistical tests for clonality versus independence of tumors from the same patient based on their LOH or genomewide copy number profiles

Author: Irina Ostrovnaya

Maintainer: Irina Ostrovnaya <ostrovni at>

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To cite this package in a publication, start R and enter:



PDF R Script Clonality
PDF   Reference Manual


biocViews Microarray, CopyNumberVariants, Classification, aCGH
Depends R (>= 2.12.2), DNAcopy
Imports DNAcopy, grDevices, graphics, stats, utils
Suggests gdata, DNAcopy
System Requirements
License GPL-3
Depends On Me
Imports Me
Suggests Me
Version 1.2.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source Clonality_1.2.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary Clonality_1.2.0.tgz
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Fred Hutchinson Cancer Research Center