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beadarraySNP
Normalization and reporting of Illumina SNP bead arrays
Bioconductor version: 2.9
Importing data from Illumina SNP experiments and performing copy number calculations and reports.
Author: Jan Oosting
Maintainer: Jan Oosting <j.oosting at lumc.nl>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("beadarraySNP")
To cite this package in a publication, start R and enter:
citation("beadarraySNP")
Documentation
| R Script | beadarraySNP.pdf | |
| Reference Manual |
Details
| biocViews | CopyNumberVariants, SNP, GeneticVariability, TwoChannel, Preprocessing, DataImport |
| Depends | methods, Biobase(>= 2.5.5), quantsmooth |
| Imports | |
| Suggests | aCGH, affy, limma, snapCGH, beadarray, DNAcopy |
| System Requirements | |
| License | GPL-2 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.20.0 |
| Since | Bioconductor 1.9 (R-2.4) |
Package Downloads
| Package Source | beadarraySNP_1.20.0.tar.gz |
| Windows Binary | beadarraySNP_1.20.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | beadarraySNP_1.20.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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