A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops.

Bioconductor version: Release (2.11)

This package was developed to simplify the use of Bioconductor tools for beginners having limited or no experience in writing R code. This library provides a graphical interface for microarray gene and exon level analysis as well as miRNA/mRNA-seq data analysis.

Author: Raffale A Calogero, Bioinformatics and Genomics Unit, Molecular Biotechnology Center, Torino (Italy)

Maintainer: Raffaele A Calogero <raffaele.calogero at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF fignew42.pdf
PDF R Script oneChannelGUI Installation
PDF R Script oneChannelGUI microarray exon-level data analysis overview
PDF R Script oneChannelGUI microarray gene-level data analysis overview
PDF R Script oneChannelGUI miRNA and RNA-seq data analysis overview
PDF R Script oneChannelGUI Stand Alone Functions
PDF   Reference Manual
Text   NEWS


biocViews DataImport, DifferentialExpression, GUI, HighThroughputSequencing, Microarray, MultipleComparisons, OneChannel, Preprocessing, QualityControl, RNAseq, Software, Statistics
Version 1.24.0
In Bioconductor since BioC 2.0 (R-2.5)
License Artistic-2.0
Depends Biobase, affylmGUI, tkWidgets, IRanges, Rsamtools, Biostrings, siggenes
Suggests annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno, chipseq, BSgenome, Rgraphviz, affy,annaffy, affyPLM, multtest, ssize, sizepower, RankProd,,,, edgeR, metaArray, MergeMaid, biomaRt, GenomeGraphs,AffyCompatible, rtracklayer, Genominator, EDASeq, limma, DESeq, goseq, hugene10sttranscriptcluster.db, mogene10sttranscriptcluster.db, ragene10sttranscriptcluster.db, GOstats, AnnotationDbi, preprocessCore, baySeq, HuExExonProbesetLocation, MoExExonProbesetLocation, RaExExonProbesetLocation, snow, RmiR, RmiR.Hs.miRNA, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9, BSgenome.Rnorvegicus.UCSC.rn4, R.utils, cummeRbund
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source oneChannelGUI_1.24.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) oneChannelGUI_1.24.0.tgz
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