chipseq: A package for analyzing chipseq data

Bioconductor version: Release (2.11)

Tools for helping process short read data for chipseq experiments

Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao

Maintainer: Bioconductor Package Maintainer <maintainer at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script A Sample ChIP-Seq analysis workflow
PDF   Reference Manual


biocViews ChIPseq, Software
Version 1.8.0
In Bioconductor since BioC 2.5 (R-2.10)
License Artistic-2.0
Depends R (>= 2.10), methods, BiocGenerics(>= 0.1.0), IRanges(>= 1.13.4), GenomicRanges(>= 1.7.7), BSgenome, ShortRead
Imports methods, BiocGenerics, IRanges, BSgenome, GenomicRanges, lattice, ShortRead, stats
Suggests GenomicFeatures, BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene
System Requirements
Depends On Me PING
Imports Me HTSeqGenie
Suggests Me ggbio, oneChannelGUI

Package Downloads

Package Source chipseq_1.8.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) chipseq_1.8.0.tgz
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