pdmclass

Classification of Microarray Samples using Penalized Discriminant Methods

Bioconductor version: Release (2.11)

This package can be used to classify microarray data using one of three penalized regression methods; partial least squares, principal components regression, or ridge regression.

Author: James W. MacDonald, Debashis Ghosh, based in part on pls code of Mike Denham

Maintainer: James W. MacDonald <jmacdon at med.umich.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("pdmclass")

To cite this package in a publication, start R and enter:

    citation("pdmclass")

Documentation

PDF R Script pdmclass Overview
PDF   Reference Manual

Details

biocViews Classification, Software
Version 1.30.0
In Bioconductor since BioC 1.7 (R-2.2)
License Artistic-2.0
Depends Biobase(>= 1.4.22), R (>= 1.9.0), fibroEset, mda
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me oneChannelGUI

Package Downloads

Package Source pdmclass_1.30.0.tar.gz
Windows Binary pdmclass_1.30.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) pdmclass_1.30.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center