Gene Ontology analyser for RNA-seq and other length biased data

Bioconductor version: Release (2.11)

Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data

Author: Matthew Young

Maintainer: Matthew Young <myoung at wehi.edu.au>, Nadia Davidson <nadia.davidson at mcri.edu.au>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script goseq User's Guide
PDF   Reference Manual


biocViews GO, GeneExpression, HighThroughputSequencingData, RNAseq, Software, Transcription
Version 1.10.0
In Bioconductor since BioC 2.6 (R-2.11)
License LGPL (>= 2)
Depends R (>= 2.11.0), BiasedUrn, geneLenDataBase
Imports mgcv, graphics, stats, utils, AnnotationDbi
Suggests GO.db, edgeR, org.Hs.eg.db
System Requirements
Depends On Me
Imports Me
Suggests Me oneChannelGUI

Package Downloads

Package Source goseq_1.10.0.tar.gz
Windows Binary goseq_1.10.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) goseq_1.10.0.tgz
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