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This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see graph.

graph: A package to handle graph data structures

Bioconductor version: 2.8

A package that implements some simple graph handling capabilities.

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon

Maintainer: Seth Falcon <sfalcon at>

Citation (from within R, enter citation("graph")):


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PDF clusterGraph.pdf
PDF graph.pdf
PDF graphAttributes.pdf
PDF GraphClass.pdf
PDF MultiGraphClass.pdf
PDF   Reference Manual


biocViews GraphsAndNetworks, Software
Version 1.30.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License Artistic-2.0
Depends R (>= 2.6.0), methods
Imports methods, stats, tools, utils
Suggests SparseM (>= 0.36), XML, RBGL, RUnit, cluster
Enhances Rgraphviz
Depends On Me apComplex, biocGraph, BioMVCClass, BioNet, gage, gaggle, GOstats, GraphAT, GSEABase, hyperdraw, hypergraph, KEGGgraph, keggorthology, maigesPack, NCIgraph, nem, netresponse, ontoTools, pathRender, pkgDepTools, ppiData, RbcBook1, RBGL, RBioinf, RCytoscape, Rgraphviz, RpsiXML, Rredland, Rtreemix, SNAData, SRAdb, topGO, yeastExpData
Imports Me biocGraph, biocViews, CAMERA, Category, DEGraph, flowCore, flowUtils, GeneAnswers, GOstats, GraphAT, GSEABase, HTSanalyzeR, KEGGgraph, keggorthology, keggorthology, NCIgraph, nem, PCpheno, pkgDepTools, ppiStats, qpgraph, Rgraphviz, rsbml, Rtreemix, topGO
Suggests Me BiocCaseStudies, Category, DEGraph, ecolitk, GSVA, qpgraph, SPIA
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