To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gaggle")

In most cases, you don't need to download the package archive at all.

gaggle

   

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see gaggle.

Broadcast data between R and Gaggle

Bioconductor version: 2.8

This package contains functions enabling data exchange between R and Gaggle enabled bioinformatics software, including Cytoscape, Firegoose and Gaggle Genome Browser.

Author: Paul Shannon <pshannon at systemsbiology.org>

Maintainer: Christopher Bare <cbare at systemsbiology.org>

Citation (from within R, enter citation("gaggle")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gaggle")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gaggle")

 

PDF gaggle.pdf
PDF   Reference Manual

Details

biocViews Annotation, DataImport, GraphsAndNetworks, Software, Visualization
Version 1.20.0
In Bioconductor since BioC 1.9 (R-2.4) (9.5 years)
License GPL version 2 or newer
Depends R (>= 2.3.0), rJava (>= 0.4), graph(>= 1.10.2), RUnit (>= 0.4.17)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://gaggle.systemsbiology.net/docs/geese/r/
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source gaggle_1.20.0.tar.gz
Windows Binary gaggle_1.20.0.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/gaggle/tree/release-2.8
Package Short Url http://bioconductor.org/packages/gaggle/
Package Downloads Report Download Stats

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