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Identification and Assessment of Single Nucleotide Variants through Shifts in Non-Consensus Base Call Frequencies

Bioconductor version: 2.14

The 'Rariant' package identifies single nucleotide variants from sequencing data based on the difference of binomially distributed mismatch rates between matched samples.

Author: Julian Gehring, Simon Anders, Bernd Klaus (EMBL Heidelberg)

Maintainer: Julian Gehring <julian.gehring at>

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biocViews GenomicVariation, Sequencing, Software, SomaticMutation, StatisticalMethod, VariantDetection, Visualization
Version 1.0.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-3
Depends R (>= 3.0.2)
Imports IRanges, ggbio, ggplot2, VariantAnnotation, h5vc, exomeCopy, SomaticSignatures, Rsamtools, shiny, GenomicRanges
Suggests h5vcData, testthat, knitr, BiocStyle, biovizBase, optparse
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