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Managing alignment tallies using a hdf5 backend

Bioconductor version: 2.14

This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files. For detail see the webpage at

Author: Paul Theodor Pyl

Maintainer: Paul Theodor Pyl <pyl at>

Citation (from within R, enter citation("h5vc")):


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HTML R Script Building a minimal genome browser with h5vc and shiny
HTML R Script h5vc - Tour
PDF   Reference Manual


biocViews Software
Version 1.4.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL (>= 3)
Depends grid, gridExtra, ggplot2
Imports rhdf5, reshape, IRanges, Biostrings, Rsamtools, methods, GenomicRanges, abind, BiocParallel, BatchJobs, h5vcData
Suggests knitr, locfit, BSgenome.Hsapiens.UCSC.hg19, bit64
System Requirements
Depends On Me
Imports Me Rariant
Suggests Me h5vcData, SomaticSignatures

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Package Source h5vc_1.4.0.tar.gz
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