To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("biovizBase")
In most cases, you don't need to download the package archive at all.
Bioconductor version: 2.14
The biovizBase package is designed to provide a set of utilities, color schemes and conventions for genomic data. It serves as the base for various high-level packages for biological data visualization. This saves development effort and encourages consistency.
Author: Tengfei Yin, Michael Lawrence, Dianne Cook
Maintainer: Tengfei Yin <yintengfei at gmail.com>
Citation (from within R,
enter citation("biovizBase")
):
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("biovizBase")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("biovizBase")
R Script | An Introduction to biovizBase | |
Reference Manual | ||
Text | NEWS |
biocViews | Infrastructure, Preprocessing, Software, Visualization |
Version | 1.12.3 |
In Bioconductor since | BioC 2.9 (R-2.14) |
License | Artistic-2.0 |
Depends | R (>= 2.10), methods |
Imports | methods, grDevices, stats, scales, Hmisc, RColorBrewer, dichromat, BiocGenerics, IRanges, GenomicRanges(>= 1.13.3), Biostrings, Rsamtools(>= 1.13.1), GenomicAlignments, GenomicFeatures, AnnotationDbi, VariantAnnotation |
Suggests | BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome, rtracklayer |
System Requirements | |
URL | |
Depends On Me | CAFE, qrqc |
Imports Me | ggbio, Gviz, qrqc |
Suggests Me | Rariant |
Follow Installation instructions to use this package in your R session.
Package Source | biovizBase_1.12.3.tar.gz |
Windows Binary | biovizBase_1.12.3.zip (32- & 64-bit) |
Mac OS X 10.6 (Snow Leopard) | biovizBase_1.12.3.tgz |
Mac OS X 10.9 (Mavericks) | biovizBase_1.12.3.tgz |
Browse/checkout source | (username/password: readonly) |
Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
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