Identification and Assessment of Single Nucleotide Variants through Shifts in Non-Consensus Base Call Frequencies


[Up] [Top]

Documentation for package ‘Rariant’ version 1.0.0

Help Pages

Rariant-package Rariant package
acCi Confidence Interval Functions
callConsensus Tally processing low-level functions
ciAdjustLevel CI Adjust
ciCovers CI Utils
ciOutside CI Utils
ciOverlap CI Utils
ciWidth CI Utils
coverageProbability Assessment of CI methods
feTest Testing Functions
gr2pos Position converters
mismatchCount Tally processing low-level functions
mismatchUtils Tally processing low-level functions
nhsCi Confidence Interval Functions
nmTest Testing Functions
plotAbundanceShift Plotting Functions
plotCIs Plotting Functions
plotConfidenceIntervals Plotting Functions
pos2gr Position converters
propCIs Confidence Interval Functions
propTests Testing Functions
Rariant Rariant package
rariant Rariant calling functions
rariantInspect Interactive inspection
rariantStandalone Rariant calling functions
readRariant Rariant calling functions
scoreTest Testing Functions
selectStrand Tally processing low-level functions
seqDepth Tally processing low-level functions
splitSample Split Sample for Binomial Data
splitSampleBinom Split Sample for Binomial Data
writeRariant Rariant calling functions